Publications

Articles

Search Title, Authors, Abstract, Year

2013

Modeling the Afferent Dynamics of the Baroreflex Control System
Mahdi A, Sturdy J, Ottesen JT, Olufsen MS
PLoS Comput Biol. 2013; 9(12)e1003384. PMCID: PMC3861044
Defects in connexin signaling underlie arrhythmogenic right ventricular cardiomyopathy in a novel mouse model
Lyon RC, Mezzano V, Wright A, Pfeiffer E, Chuang J, Banares K, Castaneda A, Ouyang K, Cui L, Gu Y, Evans SM, Omens JH, Peterson KL, McCulloch AD, Sheikh F
Hum Mol Gen. 2013 Oct; 23(5):1134-50. PMCID: PMC3919010
Left ventricular finite element model bounded by a systemic circulation model
Veress AI, Raymond GM, Gullberg GT, Bassingthwaighte JB
J Biomech Eng. 2013 May;135(5):54502. PMCID: PMC3705858
Molecular and sub cellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice
Kekenes-Huskey PM, Liao T, Gillette AK, Hake JE, Zhang Y, Michailova AP, McCulloch AD, McCammon JA
Biophysical Journal. 2013 Nov; 105(9): 2130-40. PMCID: PMC3835335
A biophysically based mathematical model for the catalytic mechanism of glutathione reductase
Pannala VR, Bazil JN, Camara AKS, Dash RK
Free Radic Biol Med. 2013 Dec; 65: 1385-97. PMCID: PMC3870161
Functional tissue units and their primary tissue motifs in multi-scale physiology
de Bono B, Grenon P, Baldock R, Hunter P
J Biomed Semantics. 2013 Oct;4(1):22. PMCID: PMC4126067
Analysis of cardiovascular dynamics in pulmonary hypertensive C57BL6/J mice
Tewari SG, Bugenhagen SM, Wang Z, Schreieir DA, Carlson BE, Chesler NC, Beard DA
Front. Physiol. 2013 Dec; 4:355. PMCID: PMC3858724
JSim, an open-source modeling system for data analysis
Butterworth E, Jardine BE, Raymond GM, Neal ML, Bassingthwaighte JB
F1000 Research. 2013 Dec, 2: 288. PMCID: PMC3901508.
SBML and CellML translation in antimony and JSim
Smith LP, Butterworth E, Bassingthwaighte JB, Sauro HM
Bioinformatics. Apr 2013; 30(7): 903-7. PMCID: PMC3967103
Tautology vs Physiology in the Etiology of Hypertension.
Beard DA
Physiology. 2013 Sep;28(5): 270-1. PMCID: PMC3768096

2012

Interpreting genetic effects through models of cardiac electromechanics.
Niederer SA, Land S, Omholt SW, Smith NP
AJP – Heart 303(11): H1294-H1303, 2012. PMID: 23042948, PMCID: PMC3532540
Impaired Cerebral Autoregulation Associated with Brain Atrophy and Worse Functional Status in Chronic Ischemic Stroke
Aoi M, Hu K, Zhao P, Lo MT, Selim M, Olufsen MS, Novak V
PLoS ONE. 7:e46794,  2012. PMID: 23071639, PMCID: PMC3469603
An atlas-based geometry pipeline for cardiac hermite model construction and diffusion tensor reorientation
Zhang Y, Liang X, Ma J, Jing Y, Gonzales MJ, Villongco C, Krishnamurthy A, Frank LR, Nigam V, Stark P, Narayan SM, McCulloch AD
Med Imag Anal 16: 1130-41, 2012. PMID: 22841777, PMCID: PMC3443263
Increase of sodium delivery stimulates the mitochondrial respiratory chain H2O2 production in rat renal medullary thick ascending limb
Ohsaki Y, O’Connor P, Mori T, Ryan RP, Dickinson BC, Chang CJ, Lu Y, Ito S, Cowley AW Jr
Am J Physiol Renal Physiol. 302:F95-F102. 2012 PMCID: PMC3251339
Dahl Salt-Sensitive Rats are Protected Against Vascular Defects Related to Diet-Induced Obesity.
Beyer AM, Raffai G, Weinberg B, Fredrich K, Lombard JH
Hypertension 60: 404-10, 2012. PMID: 22710645, PMCID: PMC3444144
Global sensitivity and identifiably analysis applied to a model predicting baroreflex regulation during head-up tilt
Olsen CH, Mehlsen J, Ottesen JT, Tran HT, Olufsen MS
Proc The 1st international workshop on innovative simulation for healthcare, I-WISH. W. Backfrieder, A. Bruzzone, F. Longo, V. Novak, J. Rosen (eds), Rende (CS), Italy, 81-6, 2012.
Comparison of the Gibbs and Suga Formulations of Cardiac Energetics: the Demise of “Isoefficiency”
Han JC, Taberner AJ, Tran K, Goo S, Nickerson DP, Nash MP, Nielsen PMF, Crampin EJ, Loiselle DS.
Journal of Applied Physiology 996–1003, 2012. PMID: 22879535. PMCID: PMC3487497
One-dimensional modeling of blood flow in viscoelastic arteries
Olufsen MS, Haider MA, Battista C, Steele BN
Proc ECOMAS, Vienna, Austria.
Relating Components of Pressure-Volume Area in Suga’s Formulation of Cardiac Energetics to Components of the Stress-Time Integral
Han JC,, Taberner AJ, Tran K, Nickerson DP, Nash MP, Nielsen PMF, Crampin EJ, Loiselle DS
Journal of Applied Physiology 988–95, 2012. PMID: 22837173, PMCID: PMC3487493
Structural correlation method for practical estimation of patient specific parameters in heart rate regulation
Ottesen JT, Olufsen MS
Proc The 1st international workshop on innovative simulation for healthcare, I-WISH. W. Backfrieder, A. Bruzzone, F. Longo, V. Novak, J. Rosen (eds), Rende (CS), Italy, 136-43, 2012.
Carrier-Mediated Transport through Biomembranes. Transport in Biological Media
Pradhan RK, Vinnakota KC, Beard DA, Dash RK
Elsevier, 2012.
Qualitative features of a new baroreceptor model
Mahdi A, Ottesen JT, Olufsen MS
Proc The 1st international workshop on innovative simulation for healthcare, I-WISH. W. Backfrieder, A. Bruzzone, F. Longo, V. Novak, J. Rosen (eds), Rende (CS), Italy, 75-80, 2012.
A Biophysical Model of the Mitochondrial ATP-Mg/P(i) Carrier
Tewari SG, Dash RK, Beard DA, Bazil JN
Biophys J. 103(7): 1616-2, 2012. PMID: 23062354, PMCID: PMC3471468
Simulation of rarefaction: impact on blood pressure in the systemic and pulmonary large and small arteries.
Olufsen MS, Hill NA, Vaughan GA, Sainsbury C, Johnson M
J Fluid Mech. 705: 280-305, 2012. PMID: 22962497 PMCID: PMC3433075
Modeling to link regional myocardial work, metabolism, and blood flows
Bassingthwaighte JB, Beard DA, Carlson BE, RK Dash, KC Vinnakota
Ann Biomed Eng. 40(11): 2379-98. PMCID: PMC3471663

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