Publications

Articles

Search Title, Authors, Abstract, Year

2013

Identification of the kinetic mechanism of succinyl-CoA synthetase
Li X, Wu F, Beard DA
Biosci Rep. 18;33(1), 2013. PMID: 23088689, PMCID: PMC3549575
Low dose angiotensin II infusion restores vascular function in cerebral arteries of high salt fed rats by increasing Cu/Zn SOD expression
Durand MJ, Lombard JH
Am. J. Hypertension 26: 695-700, 2013. PMID: 23443725, PMCID: PMC3697069
Arterial stiffening provides sufficient explanation for primary hypertension
Pettersen KH, Bugenhagen SM, Nauman J, Beard DA, Omholt SW
PLoS Comput Biol 10(5): e1003634, 2014. PMCID: PMC4031054
Integrating Multi-scale Data to Create a Virtual Physiological Mouse Heart
Land S, Louch WE, Niederer SA, Sejersted OM, Smith NP
Interface Focus 3(2): 20120076, 2013. PMCID: PMC3638477
Patient-specific models of cardiac biomechanics
Krishnamurthy A, Villongco CT, Chuang J, Frank LR, Nigam V, Belezzuoli E, Stark P, Krummen DE, Narayan S, Omens JH, McCulloch AD, Kerckhoffs RCP
J Comput Physics 244: 4-21, 2013. PMID: 23729839, PMCID: PMC3667962
Modeling Cardiovascular and Respiratory Dynamics in Congestive Heart Failure
Ellwein LM, Pope SR, Xie A, Batzel J, Kelley CT, Olufsen MS
Math Biosci 241: 56-74, 2013. PMID: 23046704, PMCID: In Process
Propagation of genetic variation in gene regulatory networks
Plahte E, Gjuvsland AB, Omholt SW
Physica D: Nonlinear Phenomena 256-257: 7-20,  2013. PMCID: PMC3752980
Beta-adrenergic stimulation maintains cardiac function in Serca2 knockout mice
Land S, Niederer SA, Aronsen JM, Espe EKS, Zhang L, Louch WE, Sjaastad I, Sejersted OM, Smith NP
Biophysical Journal 104(6): 1349-56, 2013. PMID: 23528094, PMCID: PMC3602781
Cyclicity of a Family of Lotka-Volterra Cubic Systems: Computer Algebra Approach
Fercec B, Mahdi A
Mathematics and Computers in Simulation, 87: 55-67, 2013. PMCID: PMC3818117
Effect of Regulatory Architecture on Broad versus Narrow Sense Heritability
Wang Y, Vik JO, Omholt SW, Gjuvsland AB
PLoS Computational Biology 9(5): e1003053, 2013. PMID 23671414, PMCID: PMC3649986
Introgression of Brown Norway CYP4A Genes onto the Dahl Salt-Sensitive Background Restores Vascular Function in SS-5BN Consomic Rats
Lukaszewicz KM, Falck JR, Manthati VL, Lombard JH
Clinical Science 124: 333-42, 2013. PMID: 22938512, PMCID: PMC3791890
A Three Dimensional Finite Element Model of Human Atrial Anatomy: New Methods for Cubic Hermite meshes with Extraordinary Verticies
Gonzales MJ, Sturgeon G, Krishnamurthy A, Hake J, Jonas R, Stark P, Rappel WJ, Narayan SM, Zhang Y, Segars WP, McCulloch AD
Medical Image Analysis 17(5): 525-37, 2013. PMID: 23602918, PMCID: PMC3660421
Patient specific modeling of head up tilt
Williams ND, Wind-Willassen O, Wright AA, Ottesen JT, Olufsen MS
Math Med Biol. 31(4):365-92, 2013. PMID: 23959910 PMCID: PMC4481607
Role of the CYP4A/20-HETE Pathway in Vascular Dysfunction of the Dahl Salt-Sensitive Rat
Lukaszewicz KM, Lombard JH
Clinical Science 124: 695-700, 2013. PMID: 23438293, PMCID: In Process
Bridging the genotype-phenotype gap: what does it take?
Gjuvsland AB, Vik JO, Beard DA, Hunter PJ, Omholt SW
J Physiol 591:2055-66, 2013. PMID: 23401613, PMCID: PMC3634519
Re-examining Michaelis-Menten enzyme kinetics for xanthine oxidase
Bassingthwaighte JB, Chinn TM
Adv Physiol Educ 37: 37-48, 2013. PMID: 23471247, PMCID: PMC3776473
Modeling serotonin uptake in the lung shows endothelial transporters dominate over cleft permeation
Jardine B, Bassingthwaighte JB
Am J Physiol Lung Cell Mol Physiol, 2013. PMID: 23645496, PMCID: PMC3726944
Analysis of the Kinetics and Bistability of Ubiquinol:Cytochrome C Oxidoreductase
Bazil JN, Vinnakota KC, Wu F, Beard DA
Biophysical Journal 105(2): 343-55, 2013. PMID: 23870256 PMCID: PMC3714890
An OWL knowledge base for classifying and querying collections of physiological models: A Prototype Human Physiome
Neal ML, Cook DL, Gennari JH
Int. Conf. on Biomedical Ontology. Toronto, Ont, CA
The center problem for a third-order ODEs
Mahdi A
Int J of Bifurcation and Chaos 23(5): 13500788, 2013. PMCID: PMC3957494
Validation of an axially-distributed model for quantification of myocardial blood flow using 13N-ammonia PET
Alession AM, Bassingthwaighte JB, Glenny R, Caldwell JH
J Nucl Cardiol. 2013 Feb; 20(1):64-75. PMCID: PMC4165648
Modeling the Afferent Dynamics of the Baroreflex Control System
Mahdi A, Sturdy J, Ottesen JT, Olufsen MS
PLoS Comput Biol. 2013; 9(12)e1003384. PMCID: PMC3861044
Defects in connexin signaling underlie arrhythmogenic right ventricular cardiomyopathy in a novel mouse model
Lyon RC, Mezzano V, Wright A, Pfeiffer E, Chuang J, Banares K, Castaneda A, Ouyang K, Cui L, Gu Y, Evans SM, Omens JH, Peterson KL, McCulloch AD, Sheikh F
Hum Mol Gen. 2013 Oct; 23(5):1134-50. PMCID: PMC3919010
Left ventricular finite element model bounded by a systemic circulation model
Veress AI, Raymond GM, Gullberg GT, Bassingthwaighte JB
J Biomech Eng. 2013 May;135(5):54502. PMCID: PMC3705858
Molecular and sub cellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice
Kekenes-Huskey PM, Liao T, Gillette AK, Hake JE, Zhang Y, Michailova AP, McCulloch AD, McCammon JA
Biophysical Journal. 2013 Nov; 105(9): 2130-40. PMCID: PMC3835335

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